|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
22
(LD)
,
OCL49,51-3 (LD 22B_CRS)
(D)
,
OCL49,51-4 (LD 22B_P/O)
(D)
,
OCL50
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ygaQ
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ygaQ
Search strains by all related name:
ygaQ b2654 b2655 b2656 b2657 b2658 b4462 ECK2649 JW5425 o110 o110d o164 o164c o210 o62 o62b o90 o90a ygaR yqaC yqaD
|
General information (Go to Linear View: )
|
|
Gene Name
|
ygaQ
|
|
Alternative name
|
b2654,b2655,b2656,b2657,b2658,b4462,ECK2649,JW5425,o110,o110d,o164,o164c,o210,o62,o62b,o90,o90a,ygaR,yqaC,yqaD
|
|
Location, Length
|
2,784,419 - 2,786,671
(
+
)
;
60.01
min
;
2253
(bp) ,
750
(aa)
|
|
Product
|
|
|
Operon Name
|
ygaQ_1Q_2
|
|
Note
|
putative protein; putative enzyme
|
|
Function
|
|
|
Gene Ontology
|
GO:0003824
;
catalytic activity ( ygaQ )
GO:0005975
;
carbohydrate metabolic process ( ygaQ )
GO:0043169
;
cation binding ( ygaQ )
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YGAQ_ECOLI
(
P76616
)
|
|
- Protein name
|
Hypothetical protein ygaQ.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ygaQ; OrderedLocusNames=b2654;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ygaQ
(
homologous genes of other bacterias
)
yqaC
(
homologous genes of other bacterias
)
yqaD
(
homologous genes of other bacterias
)
ygaR
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein ygaQ
|
|
PSI-BLAST
|
Hypothetical protein ygaQ
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein ygaQ
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
RGD
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GATAAAAGTA GGACATCTGT TTGCAATTAC
-070 TTTCACAACA ATTAAACATT TTTATGTTTC CGTATACATC ATATTACTCT ACCATTAGAG GAACTTTATT
0001 atgttttcta taaaaccagg acccagaaat ttacctatcg acaaccccac attgttatca tggaacatta
0071 ctgacgggga tctaaattcc aaattaaata cattagaata tctaaactgt ataacaaata ttattaattc
0141 ttgtggagtt taccctcaag gattaaaaga cagagaaatt atatcaactt ttcacgcaga aaaagttatt
0211 aatgatctgt taaaaaacga ttataaaatt tccctttctc cagatacaac ttaccgagag ttgaataaag
0281 cagcacagcg tagcattaca gcgccagaca ggataggaga aagaaaaaca taggtttatc aacgagatac
0351 aatgattgaa agaggtgata acagcggtgt ttatcagtat ggtcgtgctg aacatttcac ccacattata
0421 tctgacaaac cttccccaaa agataaatat gttgcatatg ctattaacat tcctgactat gagctggcag
0491 ccgatgtata taatattaac gtgacgtcac cttccggaca gcaagaaaca tttaaaatat taatcaatct
0561 agaacatcta cggcaaacac ttgaacgtaa atctcttact gctgttcaga aatcacaatg tgaaatcatc
0631 acccccaaaa aacctggcga agcgattctt catgctttta atgccaccta ccagcagatc agagaaaata
0701 tgtctgaatt tgcacgttgc cattatgggt atatacaaat ccctccagtg acaactttcc gcgccgacgg
0771 accagaaact cccgaagaag aaaagggtta ctggtttcat gcttatcaac ccgaagatct ttgtaccatc
0841 cataatccaa tgggagattt gcaggatttt attgcattgg ttaaagatgc taaaaaattt ggtatcgata
0911 tcattcctga ttataccttt aactttatgg gaattggggg tagtggtaaa aatgacctgg attatccctc
0981 tgctgatata cgagcgaaga tcagtaaaga tatagaaggt ggtatccctg gctattagca aggtcaggtt
1051 ttgattccat tcattaaaga tccagtaaca aaagaacgta aacaaatcca tccagaagat atacatctca
1121 ctgcaaaaga cttcgaagca agtaaagata acatctctaa ggatgaatgg gaaaacctcc atgcattaaa
1191 agaaaagcgt ttaaatggaa tgcctaaaac aacacccaaa agtgaccagg ttattatgtt gcaaaatcaa
1261 tacgttcgtg aaatgcgaaa atatggcgta cgaggtttac gttatgatgc ggcaaaacac tcaaaacatg
1331 aacaaataga aagatcaata accccaccgc ttaaaaatta taatgagcgg ttacacaata ctaacttatt
1401 taacccaaaa tatcataaaa aagccgttat gaattacatg gaatatctgg taacttgtca gttggatgaa
1471 caacaaatgt catcactgct ttatgaaaga gatgatttaa gcgccattga tttttcattg ctcatgaaaa
1541 cgataaaagc cttttcattt ggtggagatc ttcaaaccct tgcatcaaaa ccgggttcca caatctcaag
1611 tatcccatca gaaagacgga tattgattaa cattaaccac gattttccta acaatggtaa tcttttcaat
1681 gactttctat ttaaccatca acaagatgaa caattagcaa tggcatatat agccgctctg ccgttcagca
1751 ggcctttagt ttactgggat ggccaagtat taaaatcaac gactgaaatt aaaaattatg atgggtccac
1821 gcgtgtcggc ggtgaggcgt agcttaataa aggttgctct acctatcagc agctctacaa tgaattccac
1891 gcattatata tagataaagc aggaatatgg agcgcatttg agggtgtatc tgcaactaaa aacgttctgg
1961 cctttagtcg tggggattct gtgaacatta atcactctcc tcatgatgga ctagttataa taaataaagg
2031 aaacgaagaa gttgaaggta cctggcctaa caaattgcaa cctggaatat acaaaaacat ggggagtaat
2101 agcgttaaca ttattattaa taatacccga aaaattatcc cccctggtaa agtatttacg cttagaggcg
2171 gaactctaaa tatcaatatt cctgggcgta gcgctcttct tttagggaaa acaggagaac cgccgaacta
2241 tctctattta taaTTTAATG TTATATCTGC CCCGATAAAA CGGGGCAGAT AATATGTTTA GTTTACTAAC
2311 GGTCATTTTG CAGTGAAGCC ATTTACTGTT TTTTATCGAC CAG
|
