|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
22
(LD)
,
OCL49,51-3 (LD 22B_CRS)
(D)
,
OCL49,51-4 (LD 22B_P/O)
(D)
,
OCL49-1
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ygaM
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ygaM
Search strains by all related name:
ygaM b2672 ECK2666 JW2647 o113 o300
|
General information (Go to Linear View: )
|
|
Gene Name
|
ygaM
|
|
Alternative name
|
b2672,ECK2666,JW2647,o113,o300
|
|
Location, Length
|
2,798,168 - 2,798,497
(
+
)
;
60.31
min
;
330
(bp) ,
109
(aa)
|
|
Product
|
ribosome-binding protein, probably membrane-anchored, function unknown
|
|
Operon Name
|
ygaM
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
452909628
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YGAM_ECOLI
(
Q47413
;
P77800
)
|
|
- Protein name
|
Hypothetical protein ygaM.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ygaM; OrderedLocusNames=b2672, c3223, z3972, ECs3533;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ygaM
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Nmr Structure Of An Exchangeable Apolipoprotein-Manduca Sexta Apolipophorin-Iii
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein ygaM
|
|
PSI-BLAST
|
Hypothetical protein ygaM
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein Z3972 [Escherichia coli O157:H7 EDL933]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MFNRPNRNDV DDGVQDIQND VNQLADSLES VLKSWGSDAK GEAEAARSKA QALLKETRAR MHGRTRVQQA
0071 ARDAVGCADS FVRERPWCSV GTAAAVGIFI GALLSMRKS
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TCACAACGCT TTCAGAAAAG TCCATAAAGC
-070 CGCGATGAAC CTCAGTTAAG AAAATTATGG TCTACACTGA AAATTACATC GAATTCTAAT GGGGGATCAT
0001 atgtttaacc gaccgaaccg caacgacgtt gatgatggcg tgcaggatat ccagaatgat gtcaatcaat
0071 tagctgacag cctcgaatct gtattgaagt cctggggcag cgacgccaaa ggggaagctg aagccgcacg
0141 cagtaaagct caggcattgc tgaaagaaac cagggcgcga atgcatggtc gtactcgcgt ccagcaagcc
0211 gcgcgcgatg ccgttggctg cgcggattct tttgttcgtg aaagaccctg gtgtagcgtg ggtacagcag
0281 ctgcggtagg tatttttatc ggcgcactgt taagcatgcg caaatcgtag TGCAAAAATG ATAATAAATA
0351 CGCGTCTTTG ACCCCGAAGC CTGTCTTCGG GGTTTCTTTT TGCCTGGTGA ATCACAAAAA TCCCCCTACC
0421 CCGTCACGCT
|
