|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Deletion
|
2-1
(LD)
,
OCL10,16-3 (LD 2-1'_CRS)
(D)
,
OCL10,16-4 (LD 2-1'_P/O)
(D)
,
OCL15
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
hdeD
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
hdeD
Search strains by all related name:
hdeD b3511 ECK3495 JW3479 o190 yhiA
|
General information (Go to Linear View: )
|
|
Gene Name
|
hdeD
|
|
Alternative name
|
b3511,ECK3495,JW3479,o190,yhiA
|
|
Location, Length
|
3,655,018 - 3,655,590
(
+
)
;
78.78
min
;
573
(bp) ,
190
(aa)
|
|
Product
|
acid-resistance membrane protein
|
|
Operon Name
|
hdeD
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
GO:0005886
;
plasma membrane ( hdeD )
GO:0016020
;
membrane ( hdeD )
GO:0016021
;
integral to membrane ( hdeD )
|
|
PID
|
1789927
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
HDED_ECOLI
(
P26603
;
P28326
)
|
|
- Protein name
|
HdeD protein.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=hdeD; OrderedLocusNames=b3511, z4923, ECs4391, SF3545, S4222;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
hdeD
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Protein hdeD
|
|
PSI-BLAST
|
Protein hdeD
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein Z4923 [Escherichia coli O157:H7 EDL933]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
MYRISTYL
|
|
MMBR References
|
J Bacteriol. 1993;175(23):7747-8.
Physical map location of a set of Escherichia coli genes (hde) whose expression is affected by the nucleoid protein H-NS.
Yoshida T, Ueguchi C, Mizuno T.
(
8244952
)
|
| Sequences |
Amino acid
FASTA format
|
0001 MLYIDKATIL KFDLEMLKKH RRAIQFIAVL LFIVGLLCIS FPFVSGDILS TVVGALLICS GIALIVGLFS
0071 NRSHNFWPVL SGFLVAVAYL LIGYFFIRAP ELGIFAIAAF IAGLFCVAGV IRLMSWYRQR SMKGSWLQLV
0141 IGVLDIVIAW IFLGATPMVS VTLVSTLVGI ELIFSAASLF SFASLFVKQQ
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GCAATTAGGA AATTTTTATT AAATCGACTG
-070 CATTCTTAGA CGCGTTTTTG GCATAGATTG ATAGCAGGGG ATTTTCTTCT TAATTTTATA GGGTGGTTCT
0001 atgttatata tagataaggc aacaattttg aagtttgatc tggagatgct taaaaaacat cgcagagcaa
0071 tccagtttat tgccgtgctg ctgtttatcg tcgggttgct gtgtatcagt ttcccgttcg tctctggcga
0141 tattttaagc acagtagtgg gtgcattatt aatctgctcg ggtattgcgc ttattgtcgg gttattcagc
0211 aaccgcagtc ataatttctg gccggtatta tccggtttcc tcgtcgcagt cgcctattta ttgatcggct
0281 atttcttcat ccgcgcaccg gagctgggca tttttgccat tgcggcattt attgccggtt tgttctgtgt
0351 tgcaggggtt attcgcctga tgagttggta tcgtcagcgt tcaatgaaag gcagctggct acagctcgtt
0421 attggtgtgc tggatatcgt cattgcctgg atattccttg gtgcaacgcc gatggtgtct gtaacgctgg
0491 tttccacact ggtgggaatt gaactgatat ttagcgccgc cagcctgttc agcttcgcca gtttgttcgt
0561 taagcagcaa taaTTACCCC GGTTGTCACC CGGATCATAG TCACTTGATG TGACTATGAT CCGATTAATA
0631 CTCTCTCCGC TACGCAGTGT TGTAGATCAA TTGCGCACTA TCA
|
