|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
unknown
|
|
References (PMID)
|
|
|
Deletion
|
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ypfN
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ypfN
Search strains by all related name:
ypfN b4547 ECK2468 JW2457
|
General information (Go to Linear View: )
|
|
Gene Name
|
ypfN
|
|
Alternative name
|
b4547,ECK2468,JW2457
|
|
Location, Length
|
2,590,784 - 2,590,984
(
+
)
;
55.84
min
;
201
(bp) ,
66
(aa)
|
|
Product
|
putative membrane protein, UPF0370 family
|
|
Operon Name
|
yffB-dapE-ypfN
|
|
Note
|
GO_component: GO:0031225 - anchored to membrane
|
|
Function
|
|
|
Gene Ontology
|
GO:0005886
;
plasma membrane ( ypfN )
GO:0016020
;
membrane ( ypfN )
GO:0016021
;
integral to membrane ( ypfN )
|
|
PID
|
87082110
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ypfN
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
| Sequences |
Amino acid
FASTA format
|
0001 MDWLAKYWWI LVIVFLVGVL LNVIKDLKRV DHKKFLANKP ELPPHRDFND KWDDDDDWPK KDQPKK
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ATGTGTGAAC GCTGCCGACC TGCAGCTACT
-070 TGCCCGTATG TATCAACGTA TCATGGAACA GCTCGTCGCC TGATGAGTGG TTCTGCAAGA GGAAATAAGC
0001 atggactggc tggctaaata ttggtggatt ctggtgattg tctttttggt aggcgtcctg ctgaacgtga
0071 ttaaagatct caagcgcgtc gaccataaga aatttctcgc caacaagccg gagcttcccc cgcatcgtga
0141 tttcaacgat aagtgggacg atgacgacga ctggccgaaa aaggatcaac cgaagaagta aGCTGAGTGC
0211 TCAACCGTAG GCCGGATAAG GCGTTAACGC CGCATCCGGC AATGGTGAAC GATGCCTGAT GCGACGCTCA
0281 CGCGTCTTAT CAGGCCAGGT A
|
