|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Deletion
|
OCR28
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
caiF
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
caiF
Search strains by all related name:
caiF b0034 ECK0035 JW0033
|
General information (Go to Linear View: )
|
|
Gene Name
|
caiF
|
|
Alternative name
|
b0034,ECK0035,JW0033
|
|
Location, Length
|
34,300 - 34,695
(
+
)
;
0.74
min
;
396
(bp) ,
131
(aa)
|
|
Product
|
DNA-binding transcriptional activator
|
|
Operon Name
|
caiF
|
|
Note
|
transcriptional regulator of cai operon; GO_component: GO:0005737 - cytoplasm; GO_function: GO:0016563 - transcription activator activity; GO_process: GO:0009310 - amine catabolic process; GO_process: GO:0006350 - transcription
|
|
Function
|
regulator; Central intermediary metabolism: Pool, multipurpose conversions
|
|
Gene Ontology
|
GO:0006350
;
transcription ( caiF )
GO:0006355
;
regulation of transcription, DNA-dependent ( caiF )
|
|
PID
|
87081680
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
CAIF_ECOLI
(
Q47081
;
P75622
)
|
|
- Protein name
|
Transcriptional activatory protein caiF.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=caiF; OrderedLocusNames=b0034, SF0031, S0033;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
caiF
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Transcriptional activatory protein caiF
|
|
PSI-BLAST
|
Transcriptional activatory protein caiF
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
transcriptional regulator of cai operon [Shigella flexneri 5 str. 8401]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
MYRISTYL
|
|
MMBR References
|
J Bacteriol. 1996;178:1248-1257
Identification and characterization of the caiF gene encoding a potential transcriptional activator of carnitine metabolism in Escherichia coli.
Eichler, K., A. Buchet, R. Lemke, H. P. Kleber, and M. A. Mandrand-Berthelot.
|
J Bacteriol. 1998;180:2599-2608
Regulation of the carnitine pathway in Escherichia coli: investigation of the cai-fix divergent promoter region.
Buchet, A., K. Eichler, and M. A. Mandrand-Berthelot.
|
| Sequences |
Amino acid
FASTA format
|
0001 MCEGYVEKPL YLLIAEWMMA ENRWVIAREI SIHFDIEHSK AVNTLTYILS EVTEISCEVK MIPNKLEGRG
0071 CQCQRLVKVV DIDEQIYARL RNNSREKLVG VRKTPRIPAV PLTELNREQK WQMMLSKSMR R
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GTTGCATACT ATCGATATAT CCACAATTTT
-070 AATATGGCCT TGTTTAATTG CTTCAAAACG AGTCATAGCC AGACTTTTAA TTTGTGAAAC TGGAGTTCGT
0001 atgtgtgaag gatatgttga aaaaccactc tacttgttaa tcgccgaatg gatgatggct gaaaatcggt
0071 gggtgatagc aagagagatc tctattcatt tcgatattga acacagcaag gcggttaata ccctgactta
0141 tattctgtcg gaagtcacag aaataagctg cgaagttaag atgatcccta ataagctgga agggcgggga
0211 tgccagtgtc agcgactggt taaagtggtc gatatcgatg agcaaattta cgcgcgcctg cgcaataaca
0281 gtcgggaaaa attagtcggt gtaagaaaga cgccgcgtat tcctgccgtt ccgctcacgg aacttaaccg
0351 cgagcagaag tggcagatga tgttgtcaaa gagtatgcgt cgttaaTTTT ATCTCGTTGA TACCGGGCGT
0421 CCTGCTTGCC AGATGCGATG TTGTAGCATC TTATCCAGCA ACCAGGTCGC ATCCGGCAAG ATCACCGTTT
0491 AGGCGT
|
